// Molpath Germline Workflow
digraph MolpathGermlineWorkflow {
	node [shape=record]
	fastqc [label="fastqc (FastQC)"]
	getfastqc_adapters [label="getfastqc_adapters (Parse FastQC Adaptors)"]
	align_and_sort [label="align_and_sort (Align and sort reads)" color=grey80 style=filled]
	merge_and_mark [label="merge_and_mark (Merge and Mark Duplicates)" color=grey80 style=filled]
	annotate_doc [label="annotate_doc (Annotate GATK3 DepthOfCoverage Workflow)" color=grey80 style=filled]
	performance_summary [label="performance_summary (Performance summary workflow (targeted bed))" color=grey80 style=filled]
	gridss [label="gridss (Gridss)"]
	bqsr [label="bqsr (GATK Base Recalibration on Bam)" color=grey80 style=filled]
	haplotype_caller [label="haplotype_caller (GATK4: Haplotype Caller)"]
	splitnormalisevcf [label="splitnormalisevcf (Split Multiple Alleles and Normalise Vcf)"]
	addbamstats [label="addbamstats (Annotate Bam Stats to Germline Vcf Workflow)" color=grey80 style=filled]
	fastqc -> getfastqc_adapters
	getfastqc_adapters -> align_and_sort
	align_and_sort -> merge_and_mark
	merge_and_mark -> annotate_doc
	merge_and_mark -> performance_summary
	merge_and_mark -> gridss
	merge_and_mark -> bqsr
	bqsr -> haplotype_caller
	haplotype_caller -> splitnormalisevcf
	splitnormalisevcf -> addbamstats
	merge_and_mark -> addbamstats
}
