// GATK4 Somatic Variant Caller for Tumour Only Samples with Targeted BED
digraph GATK4_SomaticVariantCallerTumorOnlyTargeted {
	node [shape=record]
	mutect2 [label="mutect2 (GatkMutect2)"]
	learnorientationmodel [label="learnorientationmodel (GATK4: LearnReadOrientationModel)"]
	getpileupsummaries [label="getpileupsummaries (GATK4: GetPileupSummaries)"]
	calculatecontamination [label="calculatecontamination (GATK4: CalculateContamination)"]
	filtermutect2calls [label="filtermutect2calls (GATK4: GetFilterMutectCalls)"]
	splitnormalisevcf [label="splitnormalisevcf (Split Multiple Alleles and Normalise Vcf)"]
	mutect2 -> learnorientationmodel
	getpileupsummaries -> calculatecontamination
	learnorientationmodel -> filtermutect2calls
	calculatecontamination -> filtermutect2calls
	mutect2 -> filtermutect2calls
	filtermutect2calls -> splitnormalisevcf
}
